Examples
Linear chains
Cyclic chains
Proteax - protein comparison and naming
This web page demonstrates the use of DerNot expressions in Proteax®. DerNot expressions can be applied to existing proteins to create new protein derivatives or be calculated to express the difference between two protein entries (naming the derivative).
Calculated DerNot expression | DerNot expression applied |
---|---|
Reference protein | Query protein (aligned to ref.) |
1.10 milliseconds spent in Proteax code. | 18.9 milliseconds spent processing HTML. |
This page is for demonstration purposes only - to use Proteax on a regular basis you will need to obtain a license.
Instructions
The query field will accept either a protein entry in any recognized format (UniProt, GPMAW, PLN or FASTA) or a DerNot expression.
Regardless of what you enter in the query field Proteax will do a full round-trip calculation:
- When you enter a protein entry in the query field the "Go" button will calculate the DerNot expression that describes the difference between the query protein and the reference protein.
- The calculated DerNot expression will then be applied to the reference protein, resulting in a calculated derivative.
- When a DerNot expression is entered in the query field the "Go" button will calculate a protein derivative by applying the DerNot expression to the reference protein entry.
- The calculated derivative will then be compared with the reference protein and result in a calculated DerNot expression.